Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
W
A
Action (class in cellsystem.simulation)
activate() (cellsystem.logging.core.Log method)
(cellsystem.logging.core.log.Log method)
add_behaviors() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
add_cell_to() (cellsystem.cellsystem.SimpleCells method)
add_child() (cellsystem.logging.AncestryLog method)
(cellsystem.logging.treelogs.AncestryLog method)
(cellsystem.logging.treelogs.TreeLog method)
add_entity() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
add_event() (cellsystem.logging.geometric.WorldLines method)
add_guest() (cellsystem.simulation.world.Site method)
add_interaction_to() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
add_mutation() (cellsystem.simulation.cells.Cell method)
add_to() (cellsystem.simulation.cells.Cell method)
alive_nodes (cellsystem.logging.treelogs.TreeLog attribute)
ancestral_genome (cellsystem.simulation.cells.Cell attribute)
ancestry() (cellsystem.logging.full.FullLog method)
(cellsystem.logging.FullLog method)
AncestryLog (class in cellsystem.logging)
(class in cellsystem.logging.treelogs)
append() (cellsystem.simulation.system.Interaction method)
at() (cellsystem.simulation.World method)
(cellsystem.simulation.world.World method)
B
behavior() (in module cellsystem.simulation)
(in module cellsystem.simulation.cells)
C
Cell (class in cellsystem.simulation.cells)
cell_to_recycle() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
CellLine (class in cellsystem.simulation)
(class in cellsystem.simulation.cells)
CellSystem (class in cellsystem)
(class in cellsystem.cellsystem)
cellsystem (module)
cellsystem.cellsystem (module)
cellsystem.logging (module)
cellsystem.logging.core (module)
cellsystem.logging.core.log (module)
cellsystem.logging.core.multi (module)
cellsystem.logging.core.weak (module)
cellsystem.logging.full (module)
cellsystem.logging.geometric (module)
cellsystem.logging.treelogs (module)
cellsystem.simulation (module)
cellsystem.simulation.cells (module)
cellsystem.simulation.system (module)
cellsystem.simulation.world (module)
cellsystem.utils (module)
cellsystem.utils.tree (module)
choose_action() (cellsystem.simulation.cells.Cell method)
coordinates (cellsystem.simulation.cells.Cell attribute)
(cellsystem.simulation.world.Site attribute)
copy() (cellsystem.utils.tree.Tree method)
D
death() (cellsystem.cellsystem.SimpleCells static method)
death_probability() (cellsystem.cellsystem.SimpleCells static method)
division() (cellsystem.cellsystem.SimpleCells static method)
division_probability() (cellsystem.cellsystem.SimpleCells static method)
E
effects (cellsystem.simulation.system.Process attribute)
entities (cellsystem.simulation.system.Process attribute)
Entity (class in cellsystem.simulation.system)
F
fetch_behaviors() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
fetch_tree() (cellsystem.logging.treelogs.TreeLog method)
from_log() (cellsystem.logging.geometric.WorldLines class method)
FullLog (class in cellsystem.logging)
(class in cellsystem.logging.full)
G
genome (cellsystem.simulation.cells.Cell attribute)
genome_alphabet (cellsystem.simulation.cells.Cell attribute)
GeometricLog (class in cellsystem.logging)
(class in cellsystem.logging.geometric)
guest_count() (cellsystem.simulation.world.Site method)
H
handle_death() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
I
initialize() (cellsystem.simulation.cells.Cell method)
Interaction (class in cellsystem.simulation.system)
iter_changes() (cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.GeometricLog method)
iter_states() (cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.GeometricLog method)
L
last_state_of() (cellsystem.logging.geometric.WorldLines method)
link() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
Log (class in cellsystem.logging.core)
(class in cellsystem.logging.core.log)
log() (cellsystem.logging.core.Log method)
(cellsystem.logging.core.MultiLog method)
(cellsystem.logging.core.WeakLog method)
(cellsystem.logging.core.log.Log method)
(cellsystem.logging.core.multi.MultiLog method)
(cellsystem.logging.core.weak.WeakLog method)
log_death() (cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.PrinterLog method)
(cellsystem.logging.treelogs.TreeLog method)
log_division() (cellsystem.logging.AncestryLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.MutationsLog method)
(cellsystem.logging.PrinterLog method)
(cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.treelogs.AncestryLog method)
(cellsystem.logging.treelogs.MutationsLog method)
log_migration() (cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.PrinterLog method)
log_mutation() (cellsystem.logging.MutationsLog method)
(cellsystem.logging.PrinterLog method)
(cellsystem.logging.treelogs.MutationsLog method)
log_newcell() (cellsystem.logging.AncestryLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.MutationsLog method)
(cellsystem.logging.PrinterLog method)
(cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.treelogs.AncestryLog method)
(cellsystem.logging.treelogs.MutationsLog method)
logged() (in module cellsystem.logging)
M
middle (cellsystem.simulation.World attribute)
(cellsystem.simulation.world.World attribute)
migration() (cellsystem.cellsystem.SimpleCells static method)
migration_probability() (cellsystem.cellsystem.SimpleCells static method)
MultiLog (class in cellsystem.logging.core)
(class in cellsystem.logging.core.multi)
mutation() (cellsystem.cellsystem.SimpleCells static method)
mutation_probability() (cellsystem.cellsystem.SimpleCells static method)
mutations (cellsystem.simulation.cells.Cell attribute)
mutations() (cellsystem.logging.full.FullLog method)
(cellsystem.logging.FullLog method)
MutationsLog (class in cellsystem.logging)
(class in cellsystem.logging.treelogs)
N
new_cell() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
new_daughter() (cellsystem.simulation.cells.Cell method)
P
preparefor() (cellsystem.logging.core.Log method)
(cellsystem.logging.core.MultiLog method)
(cellsystem.logging.core.WeakLog method)
(cellsystem.logging.core.log.Log method)
(cellsystem.logging.core.multi.MultiLog method)
(cellsystem.logging.core.weak.WeakLog method)
preparefor_death() (cellsystem.logging.PrinterLog method)
preparefor_division() (cellsystem.logging.geometric.GeometricLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.PrinterLog method)
(cellsystem.logging.treelogs.TreeLog method)
preparefor_migration() (cellsystem.logging.PrinterLog method)
preparefor_mutation() (cellsystem.logging.PrinterLog method)
PrinterLog (class in cellsystem.logging)
Process (class in cellsystem.simulation.system)
process() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.Cell method)
(cellsystem.simulation.cells.CellLine method)
(cellsystem.simulation.system.Entity method)
(cellsystem.simulation.system.Interaction method)
process_interactions_in() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
prune_leaves() (cellsystem.utils.tree.Tree method)
R
random_neighbor() (cellsystem.simulation.world.Site method)
random_neighbor_of() (cellsystem.simulation.World method)
(cellsystem.simulation.world.World method)
recycle_cell() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
register() (cellsystem.logging.core.multi.MultiLog method)
(cellsystem.logging.core.MultiLog method)
register_log() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
remove() (cellsystem.logging.geometric.WorldLines method)
remove_guest() (cellsystem.simulation.world.Site method)
run() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
S
sample() (cellsystem.simulation.CellLine method)
(cellsystem.simulation.cells.CellLine method)
seed() (cellsystem.CellSystem method)
(cellsystem.cellsystem.CellSystem method)
show() (cellsystem.logging.geometric.WorldLines method)
(cellsystem.utils.tree.Tree method)
silence() (cellsystem.logging.core.Log method)
(cellsystem.logging.core.log.Log method)
SimpleCells (class in cellsystem.cellsystem)
Site (class in cellsystem.simulation.world)
start() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
stateof() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
step() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
System (class in cellsystem.simulation)
(class in cellsystem.simulation.system)
T
toroidal_wrap() (in module cellsystem.simulation.world)
total_cells (cellsystem.simulation.CellLine attribute)
(cellsystem.simulation.cells.CellLine attribute)
Tree (class in cellsystem.utils.tree)
TreeLog (class in cellsystem.logging.treelogs)
try_action() (cellsystem.simulation.Action method)
U
update() (cellsystem.logging.geometric.WorldLines method)
update_hooks() (cellsystem.simulation.System method)
(cellsystem.simulation.system.System method)
W
WeakLog (class in cellsystem.logging.core)
(class in cellsystem.logging.core.weak)
World (class in cellsystem.simulation)
(class in cellsystem.simulation.world)
WorldLines (class in cellsystem.logging.geometric)
worldlines() (cellsystem.logging.full.FullLog method)
(cellsystem.logging.FullLog method)
(cellsystem.logging.GeometricLog method)
(cellsystem.logging.geometric.GeometricLog method)
wrap() (in module cellsystem.simulation.world)
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